• A viable mushroom culture, either on agar or in a liquid culture syringe.
  • A jar or bag of properly prepared sterilized grain with a breathable filter lid.
  • A laminar flow hood or still air box.
  • A scalpel or sharp knife, and a flame.
  • Doesn’t hurt to have gloves and rubbing alcohol.

Inoculating Grain Jars from Mycelium on Agar


In order to make first generation grain spawn, you first need to get some properly prepared and sterilised grain. It’s a bit of work, and you need some specialized equipment, but once you do it a few times, it’s not all that bad.

You also need a viable mushroom culture, either on agar or in a liquid culture syringe. 


I like to do any contamination sensitive work in front of a laminar flow hood, in which inoculating grain spawn definitely qualifies. If you don’t have a laminar flow hood, then try and at least make a “still air box.”

Wipe down your grain jar and your agar dish with alcohol. Loosen the lid on the top of the grain jar for easy access, but keep it closed.


Flame sterilize your scalpel or blade until it is literally red hot. This will kill off any potential sources of contamination on the blade. Quickly cool the blade off by dipping it into the side of the agar dish. You should hear an audible sizzle.

With your cooled blade, cut a piece of mycelium out of the agar dish approximately 1 cm x 1 cm, and stab it with the tip of your scalpel.


Remove the piece of mycelium from the agar dish and throw it into the jar. You should try to have the lid of the jar open for as little time as possible.

I usually like to place at least 3 pieces of mycelium into each jar. This allows for more inoculation points, and should speed up the colonization process. The faster the jar is able to colonize, the less likely it is to contaminate.

Repeat steps 3-4 to add extra pieces.

TIP: If you want to improve the efficiency and further minimize the time that the jar lid is open, cut a grid in the agar dish so that you can pick up 3-4 pieces at once. Doing it this way, you only have to open the jar once, greatly reducing the chances of contamination


Shake the newly colonized grain jar in order to spread the pieces of agar throughout the dish. This is important for the same reason as inoculating with multiple pieces of agar- it increases the number and spacing of inoculation points, which speeds up colonization.


First, don’t forget to label your jars! Especially if you are inoculating a number of different species. It’s easy to forget what is what after inoculatinon.

Put your newly inoculated jars on a shelf at room temperature and away from direct sunlight. There is no need to “incubate” grain at warm temperatures in the dark, since the mycelium will grow happily in normal room temperature conditions.

You should shake the jar at least once during colonization. I like to do this when the jar is about 30% colonized. Shaking the jars at this time will evenly spread out the grain, which allows for faster overall colonization.

Depending on the species of mushrooms, it can take about 1-3 weeks before the jar is fully colonized.

At this time you can either add it to a bulk substrate or do a grain to grain transfer to make even more spawn!


When inoculating grain from pure mushroom culture on agar, we call the resulting grain “first generation spawn”. This is because it is only one step away from the original mushroom culture and still has plenty of potential growth before it starts to decline in vitality

For this reason, first generation spawn isn’t typically added directly to a bulk substrate, but is instead used to make even more grain spawn.

This is done by performing a grain to grain transfer, were first generation grain spawn is added to additional sterile grain in a ratio between 1:10 and 1:20. In this way, you can increase the amount of grain spawn exponentially.


Newly sterilized grain jars are very susceptible to contamination. This is because the grains are high in nutrition and vulnerable to a whole host of potential competitors that can easily outgrow mushrooms, such as trichoderma molds, cobweb molds and other project-ruining contaminants.

For this reason, it is imperative to follow proper sterile procedure, and always be cognizant of any potential source of contamination. Especially important is to not open the jar unless in a completely sterile environment and leave it open for as little time as possible.

If you are following all proper sterile procedures and still getting contaminated jars, then either the culture is contaminated or the sterilization process for the grains is not effective.